| Op. 202 | Lullaby for Morgan and Alyssa (2000) for Flute |
| Op. 201 | Two Vergil Songs (2000) for Voice and Piano |
| Op. 200 | Celestial Meditations (2000) for Organ and Brass Choir (3 Trumpets [1 C/2 Bb], 3 Horns, 2 Trombones, Tuba) or Organ, Brass Choir, and Timpani (3 Trumpets [1 C/2 Bb], Horn, 2 Trombones, Euphonium, Tuba) [2005 version] |
| Op. 199 | Jackson Flourish (2000) for Bugle and Organ |
| Op. 198 | Invocation (1999-2000) for Flute and Organ |
| Op. 195 | Equinox Dances (2000) for Piano Trio |
| Op. 193 | Light in the Morning (Third String Quartet) (2000) for String Quartet |
| Op. 191 | Dream Etudes (2000) for Clarinet |
| Op. 189 | Dawn Liturgies (2000) for Organ |
| Op. 188 | What’s the Scoop? (1999-2000) Musical for Children |
| Op. 186 | Romanza (2000) for Organ |
| Op. 185 | Divertimento (2000) for Contrabassoon and Piano or Tuba and Piano |
| Op. 184 | Gladly, the Cross-Eyed Bear (2000) for Clarinet, Trumpet, Xylophone, Piano |
| Op. 182 | When the Morning Stars Began to Sing (2000) for Organ |
| Op. 180 | Three Passiontide Motets (1999, rev. 2001) for SATB Chorus Unaccompanied |
| Op. 179 | Netherlands Travelogue (1999) for Trumpet (young performers) and Piano |
| Op. 175 | Quintet for Trumpet and Strings (1999) for Trumpet and String Quartet |
| Op. 174 | Judy Arnold her Jubilee (1999) for Piano |
| Op. 173 | Organbook I (Pieces for Manuals) (1999, rev. 2001) for Organ (manuals only) |
| Op. 172 | Two for Redemption (1999) for Organ |
| Op. 171 | Two for Pentecost (1999) for Organ |
| Op. 170 | Three Chorale Preludes (1999) for Organ |
| Op. 169 | Chorale Preludes (1999) for Piano |
| Op. 168 | For Gwyneth (1999) for Piano |
| Op. 165 | Hallelujah Shout (1999) for Piano Duet (one piano, four hands) |
| Op. 163 | The Great Wilno (1999) for Solo Piano and Wind Ensemble |
| Op. 162 | Codex (1999) for Contrabass |
| Op. 161 | In the Beginning Was the Word (1999, rev. 2003) for SATB Chorus and Organ |
| Op. 158 | O rubor sanguinis (1999) for SATB Chorus Unaccompanied |
| Op. 154 | Crucifixus (1999) for Clarinet and Organ |
| Op. 153 | Lagniappe (1999) for Three Violins and Cello or String Quartet (arr. 2000) |
| Op. 151 | Sonata for Brass Choir (1999) for Brass Choir (3 Trumpets [1 C/2 Bb], 3 Horns, 2 Trombones, Tuba) |
| Op. 150 | Fantasy on “Valmai” (1999) for Organ |
| Op. 149 | Triptych (1999) for Piano Duet (one piano, four hands) |
| Op. 144 | Trinity Matins (1999) for Organ |
| Op. 140 | Sonata da Chiesa (1999, rev. 2001) for Organ |
| Op. 137 | Ascendit in Caelum (1999, rev. 2002) for Violin and Organ |
| Op. 135 | King Nebuchadnezzar’s Dream (1999) for Organ |
| Op. 134 | Sea Findings (1999) for Solo Contrabass and Orchestra |
| Op. 122 | Plainsong Variations (1999) for Cello |
| Op. 121 | Sonata for Violin and Piano (1999, rev. 2001) for Violin and Piano |
| Op. 120 | Two Catullus Songs (1999) for Voice and Piano |
| Op. 118 | Haec Aeterna (1999) for Organ |
| Op. 117 | Three Voluntaries (1999) for Organ |
| Op. 114 | Processional Intrada (1999) for Piano |
| Op. 110 | Concerto for Bass Saxophone and Strings (1999) for Solo Bass Saxophone and String Orchestra |
| Op. 109 | Prelude and Rondino on “Herzliebster Jesu” (1999) for Organ |
| Op. 108 | Missa Ecclesiastica (1999) for Organ |
| Op. 103 | Kyrie (1999) for Trombone |
| Op. 101 | Triptych for Harpsichord (1999) for Harpsichord |
