| Op. 172 | Two for Redemption (1999) for Organ |
| Op. 171 | Two for Pentecost (1999) for Organ |
| Op. 170 | Three Chorale Preludes (1999) for Organ |
| Op. 169 | Chorale Preludes (1999) for Piano |
| Op. 168 | For Gwyneth (1999) for Piano |
| Op. 165 | Hallelujah Shout (1999) for Piano Duet (one piano, four hands) |
| Op. 163 | The Great Wilno (1999) for Solo Piano and Wind Ensemble |
| Op. 162 | Codex (1999) for Contrabass |
| Op. 161 | In the Beginning Was the Word (1999, rev. 2003) for SATB Chorus and Organ |
| Op. 158 | O rubor sanguinis (1999) for SATB Chorus Unaccompanied |
| Op. 154 | Crucifixus (1999) for Clarinet and Organ |
| Op. 153 | Lagniappe (1999) for Three Violins and Cello or String Quartet (arr. 2000) |
| Op. 151 | Sonata for Brass Choir (1999) for Brass Choir (3 Trumpets [1 C/2 Bb], 3 Horns, 2 Trombones, Tuba) |
| Op. 150 | Fantasy on “Valmai” (1999) for Organ |
| Op. 149 | Triptych (1999) for Piano Duet (one piano, four hands) |
| Op. 144 | Trinity Matins (1999) for Organ |
| Op. 140 | Sonata da Chiesa (1999, rev. 2001) for Organ |
| Op. 137 | Ascendit in Caelum (1999, rev. 2002) for Violin and Organ |
| Op. 135 | King Nebuchadnezzar’s Dream (1999) for Organ |
| Op. 134 | Sea Findings (1999) for Solo Contrabass and Orchestra |
| Op. 122 | Plainsong Variations (1999) for Cello |
| Op. 121 | Sonata for Violin and Piano (1999, rev. 2001) for Violin and Piano |
| Op. 120 | Two Catullus Songs (1999) for Voice and Piano |
| Op. 118 | Haec Aeterna (1999) for Organ |
| Op. 117 | Three Voluntaries (1999) for Organ |
| Op. 114 | Processional Intrada (1999) for Piano |
| Op. 110 | Concerto for Bass Saxophone and Strings (1999) for Solo Bass Saxophone and String Orchestra |
| Op. 109 | Prelude and Rondino on “Herzliebster Jesu” (1999) for Organ |
| Op. 108 | Missa Ecclesiastica (1999) for Organ |
| Op. 103 | Kyrie (1999) for Trombone |
| Op. 101 | Triptych for Harpsichord (1999) for Harpsichord |
| Op. 99 | Forgotten Runes (1999) for Clarinet, Violin, Cello, Piano |
| Op. 95 | Ideas: Short Etudes for Solo Oboe, Book II (1999) for Oboe |
| Op. 94 | Chanson d’Amour (1999) for Any Saxophone |
| Op. 92 | Paradoxes: Sonata for Cello and Piano (1998) for Cello and Piano |
| Op. 88 | “Grace” Toccata (1998) for Organ |
| Op. 87 | Biblicals: Concerto for Solo Piano in Five Movements (1998) for Piano |
| Op. 86 | Barnyard Episodes: Sonata for Contrabassoon and Piano (1998) for Contrabassoon and Piano |
| Op. 85 | Dentistry Music (1998) for Flute and Piano |
| Op. 84 | Floopishness: Two Pieces for Clarinet Solo (1998) for Clarinet |
| Op. 72 | Joy of Humankind: Brief Transport for Orchestra (1998) for Orchestra |
| Op. 63 | Kayser Variations (1997) for Piano |
| Op. 62 | Two for Lent (1997, rev. 1999) for Organ |
| Op. 52 | Oakdale Sketchbook (1997) for Piano |
| Op. 50 | Sonata for Clarinet and Piano (1996, rev. 1997) for Clarinet and Piano |
| Op. 47 | Toccata (1997) for Two Pianos |
| Op. 36 | A Nantucket Prelude (1996) for Piano |
| Op. 20 | Suite for Children (1995) for Piano (young performers) |
| Op. 19 | Suite for Strings (1995) for String Orchestra (young performers) |
| Op. 14 | Obsession (1993) for Piano |
